Preparing the ground for future pandemic response through the creation of global outbreak infrastructure and governance approaches
Using the latest genomic science, tissue biology, micro-technologies and medicinal chemistry to understand, test and deliver treatments for respiratory infections at speed
Creating the network and systems to scale our research, develop new compounds and build a globally distributed platform for drug discovery
Our research themes span critical domains including outbreak infrastructure, host genetics, therapeutics and technologies all aimed at improving pandemic preparedness and proactive responses
Outbreak infrastructure
Host genetics
Therapeutics
Technologies
Outbreak infrastructure
Host genetics
Therapeutics
Technologies
- Project: Outbreak data analysis
- Lead: Prof JK Baillie
- Start Date: 1st March 2020
- PSH Theme: Outbreak infrastructure
Outbreak data analysis platform
The UK Outbreak Data Analysis Platform (ODAP): bringing the expertise and capacity of the academic sector to bear on key public health
The PSH supports the development of a unique computational which brings the power of world-class high-performance computing together with the security of a clinical trusted research environments (TRE), enabling researchers to rapidly study new outbreaks. Partnerships include:
- UK HSA
- Public Health Wales
- Public Health Scotland
- Public Health England
- Public Health Northern Ireland
- Project: ISARIC Clinical Characterisation Protocol
- Lead: Prof MG Semple, Prof JK Baillie
- Start Date: 1 August 2013
- PSH Theme: Outbreak infrastructure
ISARIC Clinical Characterisation Protocol
Global research preparedness for the next outbreak
Achievements:
- Discovered the likely pathogen behind the outbreak of life-threatening hepatitis in children, 2022
- Led UK academic sector in delivering observational research during Covid pandemic
- Provided the protocol used for the first definition of Covid, in Wuhan, 2020
The ISARIC Comprehensive Clinical Characterisation Collaboration (4C) is focused on driving the scientific understanding of human infectious disease in new outbreaks or threats to public health. ISARIC4C is the link between scientists, public health agencies, and NHS teams across the UK.
The ISARIC4C team have the skills and expertise to answer important and urgent questions about new outbreaks and infections that will help not only patients in the UK, but worldwide.
ISARIC4C was at the core of the UK’s response to COVID-19 and the outbreak of unexplained hepatitis in children.
ISARIC4C has two components:
- pre-approved “sleeping” research protocols and laboratory infrastructure to obtain consent, clinical data and biological samples from patients during new outbreaks of public health concern accross the whole UK;
- established computational infrastructure, governance and open data access procedures to collate, link and share data with bona fide researchers.
- Project: GenOMICC Study
- Lead: Prof JK Baillie
- Start Date: 10 November 2015
- PSH Theme: Host Genetics
GenOMICC (Genetics of Mortality In Critical Care)
The global GenOMICC Study
The Genetics Of Mortality in Critical Care (GenOMICC) study (genomicc.org) discovered the first genetic signal ever to lead directly to a new drug treatment for infectious disease or critical illness. Our report in Nature in 2020 led directly to the RECOVERY trial of baricitinib, which was shown to be an effective treatment for Covid-19.
- over 20,000 patients recruited
- Recruiting worldwide
- An open source, long-term collaboration
- Project: Microtrials
- Lead: Prof K Dhaliwal, Prof JK Baillie
- Start Date: 1 September 2021
- PSH Theme: Therapeutics
Microtrials
Early evaluation of efficacy
The microtrials concept will test tiny doses of potential therapies in multiple areas of the lungs of critically ill patients.
Advantages:
- minimal risk of harm to the patient
- directly measure effect on key endopoint: oxygenation function
- determine efficacy with only 15 patients
We are developing molecular imaging and characterization tools for alveolar injury and endothelial injury and cellular dysfunction which will be translated into the intensive care unit.
We have created a collection of fluorescent molecular reagents that can individually and specifically detect macrophage activation, neutrophil function, cathepsin activity, endothelial leak, cell damage and T-cell granzyme activity.
In combination with optical endomicroscopy, we will be able to rapidly profile the injury and the inflammatory response in the lungs of patients.
In intubated patients, novel therapeutics can be delivered efficiently to small bronchi feeding a tiny fraction (1%) of the patient’s lung. Alveolar inflammatory imaging and oxygenation measurement using novel thin endobronchial fibres enable serial measurements of the effect of treatment.
Since both the intervention and the endpoint can be measured endoscopically, single experiments can in theory be conducted in the smallest accessible bronchus. This enables in vivo screening in critically-ill humans. Since only a small fraction of lung is treated, there is minimal risk of harm.
- Project: Medicinal chemistry
- Lead: Prof K Dhaliwal, Dr E Scholefield
- Start Date: 1 September 2021
- PSH Theme: Therapeutics
Sterile fill
Medicinal Chemistry and Sterile Fill
We have the capability to synthesise and certify new compounds for administration in humans.
We have developed a pathway for translational clinical studies in Edinburgh with full investigational supplies capability (GMP storage, labelling and QP release) and also small scale API and product fill capability
- in-house pharmaceutical grade sterile-fill facility
- safely deliver new medicines to humans
We can manufacture these reagents in-house, to clinical grade and at scale, enabling thousands of clinical assays in a micro-dosing delivery regime.
The team has already produced several molecular reagents that have been tested in first in- human trials, including technologies for imaging of bacterial pathogens and enzymatic activity in the alveolar space.
Our chemistry laboratory provides a suitable environment for the preparation of active pharmaceutical ingredients (API) for phase 0/1 clinical studies.
The chemistry laboratory is aligned with principles of Good Manufacturing Practice (GMP). The sterile fill unit is a fully GMP compliant MHRA licensed facility, operating under a comprehensive quality system.
Activities at the chemistry laboratory include:
- development of synthetic pathways for the manufacture of chemical probes or APIs
- manufacture and analysis of chemical probes or APIs
- stability and in vivo toxicological studies
- Project: Roboscope
- Lead: Prof K Dhaliwal, Dr M Khadem
- Start Date: 1 February 2016
- PSH Theme: Technologies
Robotic bronchoscopy
Precision sampling and drug delivery
- navigate to lung region with millimetre precision
- unique automated technology
We accelerate the development of an ultra-miniaturised robotic bronchoscopy platform capable of semi-automonous navigation in the mechanically ventilated distal lung to perform repeated drug delivery and spatial registration alongside microscopic interrogation and fluid/tissue collection.
The robotic bronchoscope has a minimal footprint (outer diameter<=4mm) and offers unprecedented capabilities in terms of dexterity, safety, and ease of operation.
The robot incorporates state-of-the-art optical fibre technology offering high resolution, multi-dimensional, and controlled characterisation of tissue physiology and characteristics.
This enables accurate bedside sampling or drug delivery, reduce operator dependency, and democratises lung navigations with additional patient benefits (i.e.,convenience, safety, and rapid deployment).
Our research builds on fundamental
science and the following section
includes short articles to explain our
work to the general public